Proteomics Consortium – info@proteomeconsortium.org

Experimental data from flesh quality assessment and shelf life monitoring of high pressure processed European sea bass (Dicentrarchus labrax) fillets.

Experimental data from flesh quality assessment and shelf life monitoring of high pressure processed European sea bass (Dicentrarchus labrax) fillets. / By Hugh Dixon

Fresh fish are extremely perishable meals merchandise and their brief shelf-life limits their industrial exploitation and results in waste, which has a detrimental influence on aquaculture sustainability. New non-thermal meals processing strategies, resembling high pressure (HP) processing, extend shelf-life whereas assuring high meals quality. The impact of HP processing (600MPa, 25 °C, 5min) on European …

Experimental data from flesh quality assessment and shelf life monitoring of high pressure processed European sea bass (Dicentrarchus labrax) fillets. Read More »

HSD17B4, ACAA1, and PXMP4 in Peroxisome Pathway Are Down-Regulated and Have Clinical Significance in Non-small Cell Lung Cancer.

HSD17B4, ACAA1, and PXMP4 in Peroxisome Pathway Are Down-Regulated and Have Clinical Significance in Non-small Cell Lung Cancer. / By Hugh Dixon

To discover the potential capabilities and scientific significances of peroxisomes throughout lung most cancers growth and development, we investigated the expressional profiles of peroxisome pathway genes and their correlations with scientific options in non-small cell lung most cancers (NSCLC). The RNA-seq knowledge of NSCLC together with lung squamous carcinoma (LUSC) and lung adenocarcinoma (LUAD) sufferers …

HSD17B4, ACAA1, and PXMP4 in Peroxisome Pathway Are Down-Regulated and Have Clinical Significance in Non-small Cell Lung Cancer. Read More »

Proteomic analysis and interactions network in leaves of mycorrhizal and nonmycorrhizal sorghum plants under water deficit.

Proteomic analysis and interactions network in leaves of mycorrhizal and nonmycorrhizal sorghum plants under water deficit. / By Hugh Dixon

For understanding the water deficit stress mechanism in sorghum, we carried out a physiological and proteomic analysis in the leaves of Sorghum bicolor L. Moench (a drought tolerant crop mannequin) of non-colonized and colonized plants with a consortium of arbuscular mycorrhizal fungi. Physiological outcomes point out that mycorrhizal fungi affiliation enhances progress and photosynthesis in plants, under regular and water deficit …

Proteomic analysis and interactions network in leaves of mycorrhizal and nonmycorrhizal sorghum plants under water deficit. Read More »

Deep proteome coverage based on ribosome profiling aids mass spectrometry-based protein and peptide discovery and provides evidence of alternative translation products and near-cognate translation initiation events

Default / By Hugh Dixon

An rising quantity of research contain integrative evaluation of gene and protein expression knowledge, taking benefit of new applied sciences equivalent to next-generation transcriptome sequencing and extremely delicate mass spectrometry (MS) instrumentation. Recently, a technique, termed ribosome profiling (or RIBO-seq), based on deep sequencing of ribosome-protected mRNA fragments, not directly monitoring protein synthesis, has been …

Deep proteome coverage based on ribosome profiling aids mass spectrometry-based protein and peptide discovery and provides evidence of alternative translation products and near-cognate translation initiation events Read More »

The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition

The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition / By Hugh Dixon

The ProteomeXchange (PX) Consortium of proteomics assets (http://www.proteomexchange.org) was formally began in 2011 to standardize data submission and dissemination of mass spectrometry proteomics data worldwide. We give an summary of the present consortium actions and describe the advances of the previous few years. Augmenting the PX founding members (PRIDE and PeptideAtlas, together with the PASSEL …

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High-throughput protein localization in Arabidopsis using Agrobacterium-mediated transient expression of GFP-ORF fusions

Default / By Hugh Dixon

We describe a streamlined and systematic technique for cloning inexperienced fluorescent protein (GFP)-open studying body (ORF) fusions and assessing their subcellular localization in Arabidopsis thaliana cells. The sequencing of the Arabidopsis genome has made it possible to undertake genome-based approaches to find out the perform of every protein and outline its subcellular localization. This is …

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The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome

Default / By Hugh Dixon

Following start, the breast-fed infant gastrointestinal tract is quickly colonized by a microbial consortium usually dominated by bifidobacteria. Accordingly, the full genome sequence of Bifidobacterium longum subsp. infantis ATCC15697 displays a aggressive nutrient-utilization technique concentrating on milk-borne molecules which lack a nutritive worth to the neonate. Several chromosomal loci replicate potential adaptation to the …

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MINT, the molecular interaction database: 2012 update

Default, MINT, the molecular interaction database: 2012 update / By Hugh Dixon

The Molecular INTeraction Database (MINT, ) is a public repository for protein-protein interactions (PPI) reported in peer-reviewed journals. The database grows steadily over the years and at September 2011 incorporates roughly 235,000 binary interactions captured from over 4750 publications. The net interface permits the customers to go looking, visualize and obtain interactions information. MINT is …

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The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology

Default, Medium, Monoclonal Antibody, NATtrol, Particles, The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology / By Hugh Dixon

The Gene Ontology Annotation (GOA) database ) goals to supply high-quality digital and handbook annotations to the UniProt Knowledgebase (Swiss-Prot, TrEMBL and PIR-PSD) utilizing the standardized vocabulary of the Gene Ontology (GO). As a supplementary archive of GO annotation, GOA promotes a excessive degree of integration of the knowledge represented in UniProt with different databases. …

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